4HAC

Crystal Structure of the Mevalonate Kinase from an Archaeon Methanosarcina mazei

Structural Biology Knowledgebase: 4HAC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HAC

Classification: TRANSFERASE

Total Structure Weight: 67698.07

Macromolecule Entities
Molecule Chains Length Organism Details
Mevalonate kinase A 321 Methanosarcina mazei EC#: 2.7.1.36 IUBMB
Gene Name(s): mvk MM_1762
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Mevalonate kinase B 321 Methanosarcina mazei EC#: 2.7.1.36 IUBMB
Gene Name(s): mvk MM_1762

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.211
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.29 α = 90.00
b = 135.36 β = 90.00
c = 45.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-26
  • Released Date: 2012-12-12
  • Deposition author(s): Zhuang, N., Lee, K.H.

Revision History

  • 2012-12-19
    Type: Citation | Details: Citation update