Crystal Structure of P450 2B4 F297A Mutant in Complex with Anti-platelet Drug Clopidogrel
4H1N
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  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 57026.21
    Molecule: Cytochrome P450 2B4
    Polymer: 1 Type: protein Length: 479
    Chains: A
    EC#: 1.14.14.1   
    Mutation: H226Y, F297A
    Organism: Oryctolagus cuniculus
    Gene Name: CYP2B4
    UniProtKB: Search PDB | P00178   Protein Feature View
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1PO5   THE SAME PROTEIN WITHOUT H226Y AND F297A MUTATION IN A LIGAND FREE OPEN CONFORMATION 
    1SUO   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH 4-(4-CHLOROPHENYL)IMIDAZOLE 
    2BDM   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH BIFONAZOLE 
    2Q6N   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH 1-(4-CHLOROPHENYL)IMIDAZOLE 
    3G5N   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH 1-BIPHENYL-4-METHYL-1H-IMIDAZOLE (TRIPLE LIGAND OCCUPANCY) 
    3G93   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH 1-BIPHENYL-4-METHYL-1H-IMIDAZOLE (SINGLE LIGAND OCCUPANCY) 
    3KW4   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH TICLOPIDINE 
    3ME6   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH CLOPIDOGREL 
    3MVR   THE SAME PROTEIN WITHOUT F297A MUTATION IN A LIGAND FREE CLOSED CONFORMATION 
    3R1A   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH TERT-BUTYLPHENYLACETYLENE (CLOSED CONFORMATION) 
    3R1B   THE SAME PROTEIN WITHOUT F297A MUTATION IN COMPLEX WITH TERT-BUTYLPHENYLACETYLENE (OPEN CONFORMATION) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CGE
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    CGE C16 H16 Cl N O2 S
    Clopidogrel
    CM5
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    CM5 C23 H42 O11
    5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
    HEM
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    HEM C34 H32 Fe N4 O4
    PROTOPORPHYRIN IX CONTAINING FE
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Shah, M.B.,  Jang, H.H.,  Stout, C.D.,  Halpert, J.R.

    Deposition:   2012-09-10
    Release:   2013-01-16
    Last Modified (REVDAT):   2013-02-20
     
  •   Revision History    Hide
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    2013-02-20
    Citation
    2013-01-23
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.99
    R-Value: 0.236 (obs.)
    R-Free: 0.286
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 91.39 α = 90.00 
    b = 91.39 β = 90.00 
    c = 152.29 γ = 120.00