4H09

Crystal structure of a leucine-rich repeat protein (EUBVEN_01088) from Eubacterium ventriosum ATCC 27560 at 2.50 A resolution

Structural Biology Knowledgebase: 4H09 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 4H09

Classification: PROTEIN BINDING

Total Structure Weight: 210681.88

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical leucine rich repeat protein A, B, C, D, E 379 Eubacterium ventriosum Fragment: UNP residues 33-410
Gene Name(s): EUBVEN_01088
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A, D DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, E 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 105.51 α = 90.00
b = 105.51 β = 90.00
c = 361.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-07
  • Released Date: 2012-10-10
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2014-12-24
    Type: Entry title | Details: --