4GUJ

1.50 Angstrom Crystal Structure of the Salmonella enterica 3-Dehydroquinate Dehydratase (aroD) in Complex with Shikimate

Structural Biology Knowledgebase: 4GUJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.155

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GUJ

Classification: LYASE

Total Structure Weight: 55804.11

Macromolecule Entities
Molecule Chains Length Organism Details
3-dehydroquinate dehydratase A, B 255 Salmonella enterica EC#: 4.2.1.10 IUBMB
Gene Name(s): aroD STM1358

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SKM
Query on SKM

A, B (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE- 1-CARBOXYLIC ACID
SHIKIMATE (Synonym)
C7 H10 O5
JXOHGGNKMLTUBP-HSUXUTPPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SKM N/A in BindingDB
N/A in BindingMoad
Kd: 900000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.155
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 48.62 α = 90.00
b = 74.97 β = 100.49
c = 63.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-29
  • Released Date: 2012-09-12
  • Deposition author(s): Light, S.H., Minasov, G., Duban, M.-E., Shuvalova, L., Kwon, K., Lavie, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2014-03-05
    Type: Citation | Details: Citation update