4GSL

Crystal structure of an Atg7-Atg3 crosslinked complex

Structural Biology Knowledgebase: 4GSL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GSL

Classification: PROTEIN TRANSPORT

Total Structure Weight: 211467.16

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-like modifier-activating enzyme ATG7 A, B 615 Saccharomyces cerevisiae Fragment: UNP residues 1-613
Gene Name(s): ATG7 Gene View APG7 CVT2 YHR171W
Autophagy-related protein 3 C, D 312 Saccharomyces cerevisiae Mutation: C41A, C76A, C83A
Gene Name(s): ATG3 Gene View APG3 AUT1 YNR007C N2040

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.193
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 281.56 α = 90.00
b = 125.08 β = 103.32
c = 71.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-27
  • Released Date: 2012-11-14
  • Deposition author(s): Kaiser, S.E., Mao, K., Taherbhoy, A.M., Yu, S., Olszewski, J.L., Duda, D.M., Kurinov, I., Deng, A., Fenn, T.D., Klionsky, D.J., Schulman, B.A.

Revision History

  • 2012-12-19
    Type: Citation | Details: Citation update
  • 2012-11-28
    Type: Citation | Details: Citation update