4GP6

Polynucleotide kinase

Structural Biology Knowledgebase: 4GP6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GP6

Classification: TRANSFERASE

Total Structure Weight: 39843.82

Macromolecule Entities
Molecule Chains Length Organism Details
Metallophosphoesterase A, B 171 Ruminiclostridium thermocellum EC#: 2.7.1.78 IUBMB

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.177
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.69 α = 90.00
b = 71.56 β = 90.00
c = 118.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-20
  • Released Date: 2012-11-14
  • Deposition author(s): Wang, L.K., Das, U., Smith, P., Shuman, S.

Revision History

  • 2012-12-05
    Type: Citation | Details: Citation update