4F7U

The 6S snRNP assembly intermediate

Structural Biology Knowledgebase: 4F7U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F7U

Classification: SPLICING

Total Structure Weight: 141451.55

Macromolecule Entities
Molecule Chains Length Organism Details
Small nuclear ribonucleoprotein Sm D1 A, C 119 Mus musculus Gene Name(s): Snrpd1
Small nuclear ribonucleoprotein Sm D2 B, D 118 Mus musculus Gene Name(s): Snrpd2
Small nuclear ribonucleoprotein E E, H 92 Mus musculus Gene Name(s): Snrpe
Small nuclear ribonucleoprotein F F, I 86 Xenopus laevis Gene Name(s): snrpf
Small nuclear ribonucleoprotein G G, J 76 Mus musculus Gene Name(s): Snrpg
ICLn protein P, Q 129 Drosophila melanogaster Mutation: H6144A
Gene Name(s): icln CG4924

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P6G
Query on P6G

H HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.181
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 180.72 α = 90.00
b = 65.30 β = 92.47
c = 99.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-16
  • Released Date: 2013-01-30
  • Deposition author(s): Grimm, C., Pelz, J.P.

Revision History

  • 2015-01-28
    Type: Entry title | Details: --
  • 2013-03-13
    Type: Citation | Details: Citation update