4EOK

Thr 160 phosphorylated CDK2 H84S, Q85M, K89D - human cyclin A3 complex with the inhibitor NU6102

Structural Biology Knowledgebase: 4EOK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.223

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EOK

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 128547.85

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A, C 300 Homo sapiens EC#: 2.7.11.22 IUBMB
Mutation: H84S, Q85M, K89D
Gene Name(s): CDK2 Gene View CDKN2
Cyclin-A2 B, D 258 Homo sapiens Fragment: C-terminal fragment
Gene Name(s): CCNA2 Gene View CCN1 CCNA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4SP
Query on 4SP

A, C O6-CYCLOHEXYLMETHOXY-2-(4'-SULPHAMOYLANILINO) PURINE
C18 H22 N6 O3 S
OWXORKPNCHJYOF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SGM
Query on SGM

B, D MONOTHIOGLYCEROL
C3 H8 O2 S
PJUIMOJAAPLTRJ-GSVOUGTGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
4SP N/A in BindingDB
N/A in BindingMoad
Ki: 8600 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, C L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.223
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.23 α = 90.00
b = 136.01 β = 90.00
c = 171.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-14
  • Released Date: 2013-02-06
  • Deposition author(s): Echalier, A., Cot, E., Camasses, A., Hodimont, E., Hoh, F., Sheinerman, F., Krasinska, L., Fisher, D.

Revision History

No revisions since initial release