4EB3

Crystal structure of IspH in complex with iso-HMBPP

Structural Biology Knowledgebase: 4EB3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EB3

Classification: OXIDOREDUCTASE

Total Structure Weight: 73444.04

Macromolecule Entities
Molecule Chains Length Organism Details
4-hydroxy-3-methylbut-2-enyl diphosphate reductase A, B 327 Escherichia coli EC#: 1.17.1.2 IUBMB
Gene Name(s): ispH lytB yaaE b0029 JW0027

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0O3
Query on 0O3

A, B 3-(hydroxymethyl)but-3-en-1-yl trihydrogen diphosphate
C5 H12 O8 P2
DFMXRQRICFHJAS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SF4
Query on SF4

A, B IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.189
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.58 α = 90.00
b = 80.82 β = 90.00
c = 113.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-23
  • Released Date: 2013-02-06
  • Deposition author(s): Wang, W., Wang, K., Span, I., Bacher, A., Groll, M., Oldfield, E.

Revision History

No revisions since initial release