4EAW

HCV NS5B in complex with IDX375

Structural Biology Knowledgebase: 4EAW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EAW

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 127450.79

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-directed RNA polymerase A, B 562 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: UNP residues 2420-2981
Mutation: N316Y
Gene Name(s):

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0NQ
Query on 0NQ

A, B N-{(1S)-3-[(5S)-5-tert-butyl-1-(3,3-dimethylbutyl)- 4-hydroxy-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]- 1-ethoxy-1-oxido-1,4-dihydro-2,4,1-benzodiazaphosphinin- 7-yl}methanesulfonamide
IDX375 (Synonym)
C24 H37 N4 O6 P S
FKLYVKZFUGOUQH-GOKJBEJGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.173
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.31 α = 90.00
b = 108.03 β = 90.00
c = 133.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-22
  • Released Date: 2013-03-27
  • Deposition author(s): Dousson, C.B., Paparin, J.-L., Surleraux, D., Augustin, M., Blaesse, M., Hoeppner, S., Krapp, S., Wenzkowski, C.

Revision History

No revisions since initial release