4E9D

The structure of the polo-box domain (PBD) of polo-like kinase 1 (Plk1) in complex with 3-(1-benzothiophen-2-yl)propanoyl-derivatized DPPLHSpTA peptide

Structural Biology Knowledgebase: 4E9D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.267

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E9D

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 27951.93

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase PLK1 A 232 Homo sapiens EC#: 2.7.11.21 IUBMB
Gene Name(s): PLK1 Gene View PLK
3-(1-benzothiophen-2-yl)propanoyl-derivatized DPPLHSpTA peptide E 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000810 E 3-(1-benzothiophen-2-yl)propanoyl-derivatized DPPLHSpTA peptide Peptide-like /
Enzyme inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.267
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 35.87 α = 85.84
b = 36.30 β = 77.21
c = 47.47 γ = 68.24

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-21
  • Released Date: 2012-10-10
  • Deposition author(s): Sledz, P., Hyvonen, M., Lang, S., Stubbs, C.J., Abell, C.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2012-10-17
    Type: Citation | Details: Citation update