Crystal structure of a complex between the human adenovirus type 2 E3-19K protein and MHC class I molecule HLA-A2/Tax
4E5X
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System/transcription
    Structure Weight: 113486.38
    Molecule: HLA class I histocompatibility antigen, A-2 alpha chain
    Polymer: 1 Type: protein Length: 275
    Chains: A, D
    Fragment: heavy chain
    Organism: Homo sapiens
    Gene Names: HLAA Gene View for HLA-A
    UniProtKB: Search PDB | P01892   Protein Feature View
    Molecule: Beta-2-microglobulin
    Polymer: 2 Type: protein Length: 100
    Chains: B, E
    Fragment: Beta 2-microglobulin
    Organism: Homo sapiens
    Gene Names: CDABP0092 HDCMA22P Gene View for B2M
    UniProtKB: Search PDB | P61769   Protein Feature View
    Molecule: Protein Tax-1
    Polymer: 3 Type: protein Length: 9
    Chains: C, F
    Fragment: Tax peptide
    Organism: Human T-cell lymphotropic virus type 1 (african isolate)
    Gene Name: tax
    UniProtKB: Search PDB | P0C213   Protein Feature View
    Molecule: Early E3 18.5 kDa glycoprotein
    Polymer: 4 Type: protein Length: 100
    Chains: G, H
    Fragment: Ad2 e3-19K
    Organism: Human adenovirus 6
    UniProtKB: Search PDB | P68979   Protein Feature View
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (Human T-cell lymphotropic virus type 1 (african isolate))   Taxonomy    
    Polymer: 4
    Scientific Name: Human adenovirus 6   Taxonomy   Common Name: Hadv-6 Expression System: Escherichia coli  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Li, L.,  Bouvier, M.

    Deposition:   2012-03-14
    Release:   2012-10-10
    Last Modified (REVDAT):   2012-11-21
     
  •   Revision History    Hide
    Mouse over text for details
    2012-11-21
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.95
    R-Value: 0.217 (obs.)
    R-Free: 0.241
    Space Group: I 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 113.19 α = 90.00 
    b = 133.67 β = 90.00 
    c = 196.72 γ = 90.00