4DY1

tRNA-guanine transglycosylase F92C C158S C281S mutant

Structural Biology Knowledgebase: 4DY1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.166

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DY1

Classification: TRANSFERASE

Total Structure Weight: 43160.21

Macromolecule Entities
Molecule Chains Length Organism Details
Queuine tRNA-ribosyltransferase A 388 Zymomonas mobilis EC#: 2.4.2.29 IUBMB
Mutation: F92C, C158S, C281S, T312K
Gene Name(s): tgt ZMO0363

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.166
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.83 α = 90.00
b = 64.60 β = 96.39
c = 71.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-28
  • Released Date: 2013-03-27
  • Deposition author(s): Jakobi, S., Heine, A., Klebe, G.

Revision History

  • 2015-09-02
    Type: Citation | Details: Citation update