4DW2

The crystal structure of uPA in complex with the Fab fragment of mAb-112

Structural Biology Knowledgebase: 4DW2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 4DW2

Classification: HYDROLASE / IMMUNE SYSTEM

Total Structure Weight: 74301.91

Macromolecule Entities
Molecule Chains Length Organism Details
Urokinase-type plasminogen activator U 246 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: catalytic domain, UNP RESIDUES 179-424
Mutation: C122A, N145Q
Gene Name(s): PLAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab fragment of pro-uPA antibody mAb-112 H 212 Mus musculus
Fab fragment of pro-uPA antibody mAb-112 L 215 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.240
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.96 α = 90.00
b = 94.96 β = 90.00
c = 154.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-24
  • Released Date: 2013-01-16
  • Deposition author(s): Jiang, L., Botkjaer, K.A., Andersen, L.M., Yuan, C., Andreasen, P.A., Huang, M.

Revision History

No revisions since initial release