4DUI

DARPIN D1 binding to tubulin beta chain (not in complex)

Structural Biology Knowledgebase: 4DUI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.149
  • R-Value Work: 0.123

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DUI

Classification: DE NOVO PROTEIN

Total Structure Weight: 18557.29

Macromolecule Entities
Molecule Chains Length Organism Details
DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1 A 169 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SME
Query on SME
A L-PEPTIDE LINKING C5 H11 N O3 S MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.149
  • R-Value Work: 0.123
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.40 α = 90.00
b = 43.40 β = 90.00
c = 143.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-22
  • Released Date: 2013-02-27
  • Deposition author(s): Pecqueur, L., Duellberg, C., Dreier, B., Wang, Q., Jiang, C., Pluckthun, A., Surrey, T., Gigant, B., Knossow, M.

Revision History

No revisions since initial release