4DRJ

o-crystal structure of the PPIase domain of FKBP52, Rapamycin and the FRB fragment of mTOR

Structural Biology Knowledgebase: 4DRJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DRJ

Classification: Isomerase / Transferase

Total Structure Weight: 28410.70

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase FKBP4 A 144 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: Fk1 domain, UNP residues 1-140
Gene Name(s): FKBP4 Gene View FKBP52
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Serine/threonine-protein kinase mTOR B 98 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: FRB domain, UNP residues 2025-2114
Gene Name(s): MTOR Gene View FRAP FRAP1 FRAP2 RAFT1 RAPT1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RAP
Query on RAP

A RAPAMYCIN IMMUNOSUPPRESSANT DRUG
C51 H79 N O13
QFJCIRLUMZQUOT-HPLJOQBZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RAP IC50: 0.1 - 3.5 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.188
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.52 α = 90.00
b = 62.99 β = 90.00
c = 70.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-17
  • Released Date: 2013-02-06
  • Deposition author(s): Maerz, A.M., Bracher, A., Hausch, F.

Revision History

  • 2013-03-27
    Type: Citation | Details: Citation update