4DMZ

PelD 156-455 from Pseudomonas aeruginosa PA14, apo form

Structural Biology Knowledgebase: 4DMZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DMZ

Classification: Nucleotide-binding Protein

Total Structure Weight: 72915.05

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein pelD A, B 321 Pseudomonas aeruginosa Fragment: Soluble fragment

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
TRS
Query on TRS

B 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.196
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 88.51 α = 90.00
b = 113.35 β = 90.00
c = 61.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-08
  • Released Date: 2012-05-23
  • Deposition author(s): Whitney, J.C., Colvin, K.M., Marmont, L.S., Robinson, H., Parsek, M.R., Howell, P.L.

Revision History

  • 2012-07-25
    Type: Citation | Details: Citation update
  • 2012-05-30
    Type: Citation | Details: Citation update