4DI2

Crystal structure of BACE1 in complex with hydroxyethylamine inhibitor 37

Structural Biology Knowledgebase: 4DI2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DI2

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 139707.54

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A, B, C 411 Homo sapiens EC#: 3.4.23.46 IUBMB
Fragment: catalytic domain (UNP Residues 43-453)
Mutation: R-5K, R-4K
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0K9
Query on 0K9

A, B, C (2R)-N-{(2S,3R)-4-{[(4'S)-6'-(2,2-dimethylpropyl)- 3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3- b]pyridin]-4'-yl]amino}-3-hydroxy-1-[3-(1,3- thiazol-2-yl)phenyl]butan-2-yl}-2-methoxypropanamide
C33 H44 N4 O4 S
IUSARDYWEPUTPN-OZBXUNDUSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, B, C GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0K9 N/A in BindingDB
IC50: 5.5 nM  BindingMOAD
IC50: 5.5 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.195
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.70 α = 90.00
b = 104.76 β = 103.87
c = 101.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-30
  • Released Date: 2012-10-10
  • Deposition author(s): Whittington, D.A., Long, A.M.

Revision History

  • 2013-06-19
    Type: Citation | Details: Citation update