4DHL

Crystal structure of red kidney bean purple acid phosphatase in complex with Maybridge fragment MO07123

Structural Biology Knowledgebase: 4DHL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.158

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DHL

Classification: HYDROLASE

Total Structure Weight: 206788.32

Macromolecule Entities
Molecule Chains Length Organism Details
Purple acid phosphatase A, B, C, D 426 Phaseolus vulgaris EC#: 3.1.3.2 IUBMB

Small Molecules
Ligands 8 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0K7
Query on 0K7

A, B, C, D 2-(4-methylphenyl)-1,3-thiazole-4-carboxylic acid
MO07123 (Synonym)
C11 H9 N O2 S
MTVWIZYQYPRZGZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
EDO
Query on EDO

A, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
FE
Query on FE

A, B, C, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
FUC
Query on FUC

A, B, C, D ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, C, D GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0K7 N/A in BindingDB
Ki: 33000 nM  BindingMOAD
Ki: 33000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.158
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 126.10 α = 90.00
b = 126.10 β = 90.00
c = 297.98 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-29
  • Released Date: 2012-12-12
  • Deposition author(s): Feder, D., Clayton, D.J., Hussein, W.M., Schenk, G., McGeary, R., Guddat, L.W.

Revision History

  • 2013-01-02
    Type: Citation | Details: Citation update