4DDQ

Structural plasticity of the Bacillus subtilis GyrA homodimer

Structural Biology Knowledgebase: 4DDQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.174

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DDQ

Classification: ISOMERASE

Total Structure Weight: 340876.54

Macromolecule Entities
Molecule Chains Length Organism Details
DNA gyrase subunit A A, B, C..., D, E, FA, B, C, D, E, F 502 Bacillus subtilis EC#: 5.99.1.3 IUBMB
Gene Name(s): gyrA cafB nalA BSU00070

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K
Query on K

A, B, C, D, E, F POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
TRS
Query on TRS

F 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.174
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 152.80 α = 90.00
b = 165.11 β = 90.00
c = 180.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-19
  • Released Date: 2013-02-13
  • Deposition author(s): Rudolph, M.G., Klostermeier, D.

Revision History

  • 2013-07-24
    Type: Citation | Details: Citation update
  • 2013-05-08
    Type: Citation | Details: Citation update