4D9W

Thermolysin In Complex With UBTLN32

Structural Biology Knowledgebase: 4D9W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.140
  • R-Value Work: 0.109

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4D9W

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 35602.48

Macromolecule Entities
Molecule Chains Length Organism Details
Thermolysin A 316 Bacillus thermoproteolyticus EC#: 3.4.24.27 IUBMB
Fragment: mature form (UNP residues 233-548)
Gene Name(s): npr

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
X32
Query on X32

A N-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]- L-leucyl-L-phenylalanine
C24 H32 N3 O7 P
LSBJYKCMZGPGPG-SFTDATJTSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.140
  • R-Value Work: 0.109
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.10 α = 90.00
b = 93.10 β = 90.00
c = 130.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-12
  • Released Date: 2013-01-16
  • Deposition author(s): Biela, A., Heine, A., Klebe, G.

Revision History

No revisions since initial release