4BI0

Scaffold Focused Virtual Screening: Prospective Application to the Discovery of TTK Inhibitor

Structural Biology Knowledgebase: 4BI0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BI0

Classification: TRANSFERASE

Total Structure Weight: 36967.63

Macromolecule Entities
Molecule Chains Length Organism Details
DUAL SPECIFICITY PROTEIN KINASE TTK A 313 Homo sapiens EC#: 2.7.12.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 518-807
Gene Name(s): TTK Gene View MPS1 MPS1L1

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
7PE
Query on 7PE

A 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
POLYETHYLENE GLYCOL FRAGMENT (Synonym)
C14 H30 O7
UKXKPKBTMYNOFS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Z0W
Query on Z0W

A 5H-pyrimido[5,4-b]indole
C10 H7 N3
IADMQABXGAXDPF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
Z0W N/A in BindingDB
N/A in BindingMoad
IC50: 58600 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.184
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.23 α = 90.00
b = 111.97 β = 90.00
c = 113.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-09
  • Released Date: 2013-05-22
  • Deposition author(s): Langdon, S.R., Westwood, I.M., van Montfort, R.L.M., Brown, N., Blagg, J.

Revision History

  • 2015-01-14
    Type: Atom nomenclature | Details: HETATM
  • 2015-01-14
    Type: Other | Details: TER, MASTER
  • 2015-01-14
    Type: Linkage | Details: CONECT
  • 2013-06-05
    Type: Citation | Details: JRNL