4BCQ

Structure of CDK2 in complex with cyclin A and a 2-amino-4-heteroaryl- pyrimidine inhibitor

Structural Biology Knowledgebase: 4BCQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BCQ

Classification: TRANSFERASE / CELL CYCLE

Total Structure Weight: 129586.91

Macromolecule Entities
Molecule Chains Length Organism Details
CYCLIN-DEPENDENT KINASE 2 A, C 301 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
CYCLIN-A2 B 262 Bos taurus Fragment: RESIDUES 169-429
Mutation: A303T, I311V, V377I, Q378R, L387S, L391M, R400K
Gene Name(s): CCNA2 Gene View CCNA
CYCLIN-A2 D 262 Bos taurus Fragment: RESIDUES 169-429
Mutation: A303T, I311V, V377I, Q378R, T386S, C390M, R400K
Gene Name(s): CCNA2 Gene View CCNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TJF
Query on TJF

A, C 4-[4-methyl-2-(methylamino)-1,3-thiazol-5- yl]-2-{[3-(morpholin-4-ylcarbonyl)phenyl]amino}pyrimidine- 5-carbonitrile
C21 H21 N7 O2 S
UFUGKBGESCNADR-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TJF N/A in BindingDB
Ki: 147 nM  BindingMOAD
Kd: 147 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, C L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.215
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.08 α = 90.00
b = 141.16 β = 90.00
c = 155.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-02
  • Released Date: 2013-01-09
  • Deposition author(s): Hole, A.J., Baumli, S., Wang, S., Endicott, J.A., Noble, M.E.M.

Revision History

  • 2013-02-27
    Type: Citation | Details: JRNL