4B6D

Structure of the atypical C1 domain of MgcRacGAP

Structural Biology Knowledgebase: 4B6D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B6D

Classification: SIGNALING PROTEIN

Total Structure Weight: 41816.43

Macromolecule Entities
Molecule Chains Length Organism Details
RAC GTPASE-ACTIVATING PROTEIN 1 A, B, C..., D, E, FA, B, C, D, E, F 61 Homo sapiens Fragment: C1 DOMAIN, RESIDUES 284-339
Gene Name(s): RACGAP1 Gene View KIAA1478 MGCRACGAP

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.210
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 36.85 α = 90.00
b = 133.85 β = 109.03
c = 56.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-09
  • Released Date: 2012-12-12
  • Deposition author(s): Pye, V.E., Lekomtsev, S., Petronczki, M., Cherepanov, P.

Revision History

  • 2013-01-23
    Type: Citation | Details: JRNL
  • 2012-12-19
    Type: Citation | Details: JRNL