4AQ0

Structure of the Gh92 Family Glycosyl Hydrolase Ccman5 in complex with deoxymannojirimycin

Structural Biology Knowledgebase: 4AQ0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AQ0

Classification: HYDROLASE

Total Structure Weight: 169112.87

Macromolecule Entities
Molecule Chains Length Organism Details
CCMAN5 A, B 790 Cellulosimicrobium cellulans EC#: 3.2.1.24 IUBMB
Fragment: RESIDUES 1-774
Details: N-TERMINAL FRAGMENT CORRESPONDING TO CATALYTIC DOMAIN.

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
B3P
Query on B3P

A 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3- DIOL
C11 H26 N2 O6
HHKZCCWKTZRCCL-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
DMJ
Query on DMJ

B 1-DEOXYMANNOJIRIMYCIN
C6 H13 N O4
LXBIFEVIBLOUGU-KVTDHHQDSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.170
  • Space Group: P 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.62 α = 90.00
b = 91.79 β = 90.00
c = 224.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-12
  • Released Date: 2013-02-06
  • Deposition author(s): Baranova, E., Tiels, P., Callewaert, N., Remaut, H.

Revision History

No revisions since initial release