4ACM

CDK2 IN COMPLEX WITH 3-AMINO-6-(4-{[2-(DIMETHYLAMINO)ETHYL]SULFAMOYL}-PHENYL)-N-PYRIDIN-3-YLPYRAZINE-2-CARBOXAMIDE

Structural Biology Knowledgebase: 4ACM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4ACM

Classification: TRANSFERASE

Total Structure Weight: 34628.50

Macromolecule Entities
Molecule Chains Length Organism Details
CYCLIN-DEPENDENT KINASE 2 A 299 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: ACETYLATION AT N-TERMINAL METHIONINE
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
7YG
Query on 7YG

A 3-AMINO-6-(4-{[2-(DIMETHYLAMINO)ETHYL]SULFAMOYL}PHENYL)- N-PYRIDIN-3-YLPYRAZINE-2-CARBOXAMIDE
C20 H23 N7 O3 S
HULMMZPBCUBDJN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
7YG N/A in BindingDB
Ki: 210 nM  BindingMOAD
Ki: 210 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.184
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.43 α = 90.00
b = 71.81 β = 90.00
c = 72.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-16
  • Released Date: 2012-05-16
  • Deposition author(s): Berg, S., Bhat, R., Anderson, M., Bergh, M., Brassington, C., Hellberg, S., Jerning, E., Hogdin, K., Lo-Alfredsson, Y., Neelissen, J., Nilsson, Y., Ormo, M., Soderman, P., Stanway, J., Tucker, J., Von Berga, S., Weigelt, T., Xue, Y.

Revision History

  • 2012-11-21
    Type: Citation | Details: JRNL