4A7C

Crystal structure of PIM1 kinase with ETP46546

Structural Biology Knowledgebase: 4A7C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A7C

Classification: TRANSFERASE

Total Structure Weight: 35965.91

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE PIM-1 A 308 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 434-717
Details: PHOSPHORYLATED AT SER 261
Gene Name(s): PIM1 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
E46
Query on E46

A N-(piperidin-4-ylmethyl)-3-[3-(trifluoromethyloxy)phenyl]- [1,2,3]triazolo[4,5-b]pyridin-5-amine
C18 H19 F3 N6 O
OZAALIWIRMBCOR-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
E46 EC50: 45 nM (100) BindingDB
IC50: 6 nM (100) BindingDB

IC50: 6 nM  BindingMOAD
IC50: 6 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.169
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 99.36 α = 90.00
b = 99.36 β = 90.00
c = 81.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-12
  • Released Date: 2012-02-15
  • Deposition author(s): Mazzorana, M., Montoya, G.

Revision History

  • 2015-01-14
    Type: Non-polymer description | Details: HETNAM
  • 2012-05-23
    Type: Other | Details: Other, Sequence database correspondence