4A5Z

Structures of MITD1

Structural Biology Knowledgebase: 4A5Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A5Z

Classification: PROTEIN TRANSPORT

Total Structure Weight: 79261.09

Macromolecule Entities
Molecule Chains Length Organism Details
MIT DOMAIN-CONTAINING PROTEIN 1 A, B, C, D 163 Homo sapiens Fragment: RESIDUES 90-243
Mutation: K90D, K243D
Gene Name(s): MITD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.191
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.02 α = 90.00
b = 109.41 β = 100.55
c = 74.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-30
  • Released Date: 2012-11-14
  • Deposition author(s): Hadders, M.A., Agromayor, M., Caballe, A., Obita, T., Perisic, O., Williams, R.L., Martin-Serrano, J.

Revision History

  • 2013-11-13
    Type: Data collection | Details: REMARK 200
  • 2013-11-13
    Type: Citation | Details: JRNL