3ZUN

pVHL54-213-EloB-EloC complex_(2S,4R)-4-hydroxy-1-(2-(3-methylisoxazol- 5-yl)acetyl)-N-(4-nitrobenzyl)pyrrolidine-2-carboxamide bound

Structural Biology Knowledgebase: 3ZUN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZUN

Classification: TRANSCRIPTION

Total Structure Weight: 173506.47

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 A, D, G, J 118 Homo sapiens Gene Name(s): TCEB2 Gene View
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 B, E, H, K 97 Homo sapiens Gene Name(s): TCEB1 Gene View
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR C, F, I, L 163 Homo sapiens Fragment: PVHL54-213, RESIDUES 54-213
Gene Name(s): VHL Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZUN
Query on ZUN

C, F, I, L (4R)-N-[4-(DIHYDROXYAMINO)BENZYL]-4-HYDROXY- 1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-L-PROLINAMIDE
C18 H22 N4 O6
WJYVXCQUWDPFNN-ZBFHGGJFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.229
  • Space Group: P 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.40 α = 90.00
b = 93.40 β = 90.00
c = 362.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-19
  • Released Date: 2012-07-25
  • Deposition author(s): Vanmolle, I., Buckley, D., Crews, C.M., Ciulli, A.

Revision History

No revisions since initial release