3ZTC

pVHL54-213-EloB-EloC complex _ (2S,4R)-N-((1,1'-biphenyl)-4-ylmethyl)- 4-hydroxy-1-(2-(3-methylisoxazol-5-yl)acetyl)pyrrolidine-2- carboxamide

Structural Biology Knowledgebase: 3ZTC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.317
  • R-Value Work: 0.239

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZTC

Classification: TRANSCRIPTION

Total Structure Weight: 173530.72

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 A, D, G, J 118 Homo sapiens Gene Name(s): TCEB2 Gene View
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 B, E, H, K 97 Homo sapiens Gene Name(s): TCEB1 Gene View
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR C, F, I, L 163 Homo sapiens Fragment: RESIDUES 54-213
Gene Name(s): VHL Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TR0
Query on TR0

C, F, I, L (4R)-N-(BIPHENYL-4-YLMETHYL)-4-HYDROXY-1- [(3-METHYLISOXAZOL-5-YL)ACETYL]-L-PROLINAMIDE
C24 H25 N3 O4
NRELVQVYPBFBDC-IRLDBZIGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TR0 N/A in BindingDB
N/A in BindingMoad
Kd: 27700 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.317
  • R-Value Work: 0.239
  • Space Group: P 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.09 α = 90.00
b = 94.09 β = 90.00
c = 366.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-06
  • Released Date: 2012-07-25
  • Deposition author(s): Vanmolle, I., Buckley, D.L., Crews, C.M., Ciulli, A.

Revision History

  • 2012-11-14
    Type: Citation | Details: JRNL
  • 2012-11-14
    Type: Entry authorship | Details: AUTHOR