3ZNS

HDAC7 bound with TFMO inhibitor tmp942

Structural Biology Knowledgebase: 3ZNS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 3ZNS

Classification: HYDROLASE

Total Structure Weight: 138765.83

Macromolecule Entities
Molecule Chains Length Organism Details
HISTONE DEACETYLASE 7 A, B, C 423 Homo sapiens EC#: 3.5.1.98 IUBMB
Fragment: CATALYTIC DOMAIN
Details: INHIBITOR
Gene Name(s): HDAC7 Gene View HDAC7A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NU7
Query on NU7

A, B, C N-{[1-methyl-4-(4-phenyl-1,3-thiazol-2-yl)piperidin- 4-yl]methyl}-3-[5-(trifluoromethyl)-1,2,4- oxadiazol-3-yl]benzamide
C26 H24 F3 N5 O2 S
BQFISAUAZNJOEG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B, C POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NU7 N/A in BindingDB
Ki: 39 nM  BindingMOAD
Ki: 39 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.186
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 81.57 α = 90.00
b = 81.57 β = 90.00
c = 150.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-15
  • Released Date: 2013-03-27
  • Deposition author(s): Lobera, M., Madauss, K.P., Pohlhaus, D.T., Trump, R.P., Nolan, M.A.

Revision History

  • 2013-05-01
    Type: Citation | Details: JRNL
  • 2013-04-03
    Type: Citation | Details: JRNL