3W9A

Crystal structure of the catalytic domain of the glycoside hydrolase family 131 protein from Coprinopsis cinerea

Structural Biology Knowledgebase: 3W9A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 3W9A

Classification: HYDROLASE

Total Structure Weight: 112674.91

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein A, B, C, D 245 Coprinopsis cinerea Fragment: catalytic domain, UNP residues 19-252
Gene Name(s): CC1G_07166
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.188
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.20 α = 89.99
b = 68.42 β = 72.87
c = 69.17 γ = 85.81

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-01
  • Released Date: 2013-05-22
  • Deposition author(s): Miyazaki, T., Tanaka, Y., Tamura, M., Yoshida, M., Nishikawa, A., Tonozuka, T.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update
  • 2013-06-05
    Type: Citation | Details: Citation update