3VY8

Crystal Structure of PorB from Neisseria meningitidis in complex with Cesium ion, space group P63

Structural Biology Knowledgebase: 3VY8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 3VY8

Classification: MEMBRANE PROTEIN

Total Structure Weight: 38578.38

Macromolecule Entities
Molecule Chains Length Organism Details
Outer membrane protein X 355 Neisseria meningitidis

Membrane Protein

Source: inferred by homology | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Porins and Relatives

Protein Name: PorB outer membrane protein, native structure


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CS
Query on CS

X CESIUM ION
Cs
NCMHKCKGHRPLCM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.210
  • Space Group: P 63
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.20 α = 90.00
b = 83.20 β = 90.00
c = 106.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-21
  • Released Date: 2013-01-02
  • Deposition author(s): Kattner, C., Zaucha, J., Jaenecke, F., Zachariae, U., Tanabe, M.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update