Crystal structure of Arabidopsis thaliana Atg7NTD-Atg3 complex
3VX8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 138047.80
    Molecule: Ubiquitin-like modifier-activating enzyme atg7
    Polymer: 1 Type: protein Length: 323
    Chains: A, D
    Fragment: UNP RESIDUES 7-325
    Organism: Arabidopsis thaliana
    Gene Names: APG7 At5g45900 K15I22.10 Gene View for ATG7
    UniProtKB: Search PDB | Q94CD5   Protein Feature View
    Molecule: Autophagy-related protein 3
    Polymer: 2 Type: protein Length: 292
    Chains: B, C
    Fragment: UNP RESIDUES 26-313
    Organism: Arabidopsis thaliana
    Gene Names: APG3 At5g61500 K11J9.3 Gene View for ATG3
    UniProtKB: Search PDB | Q0WWQ1   Protein Feature View
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Arabidopsis thaliana   Taxonomy   Common Name: Mouse-ear cress Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Arabidopsis thaliana   Taxonomy   Common Name: Mouse-ear cress Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3VX6   The same protein in a free form 
    3VX7    
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Matoba, K.,  Fujioka, Y.,  Noda, N.N.

    Deposition:   2012-09-11
    Release:   2012-11-14
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.11
    R-Value: 0.229 (obs.)
    R-Free: 0.278
    Space Group: P 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 101.52 α = 90.00 
    b = 132.68 β = 90.00 
    c = 102.81 γ = 90.00