3VWB

Crystal structure of VirB core domain (Se-Met derivative) complexed with the cis-acting site (5-BRU modifications) upstream icsb promoter

Structural Biology Knowledgebase: 3VWB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.235

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VWB

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 32357.08


Macromolecule Entities
Molecule Chains Length Organism Details
Virulence regulon transcriptional activator virB A 143 Shigella flexneri Fragment: UNP residues 129-250
Gene Name(s): virB invE CP0123
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (26-MER) C 26 synthetic
DNA (26-MER) B 26 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
BRU
Query on BRU
C DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.235
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.32 α = 90.00
b = 163.05 β = 90.00
c = 39.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-21
  • Released Date: 2013-08-21
  • Deposition author(s): Gao, X.P., Waltersperger, S., Wang, M.T., Cui, S.

Revision History

  • 2013-12-25
    Type: Citation | Details: Citation update
  • 2013-12-11
    Type: Citation | Details: Citation update
  • 2013-09-04
    Type: Entry title | Details: --
  • 2013-09-04
    Type: Citation | Details: update primary title