3VV0

Crystal structure of histone methyltransferase SET7/9 in comlex with DAAM-3

Structural Biology Knowledgebase: 3VV0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VV0

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 29577.99

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase SETD7 A 263 Homo sapiens EC#: 2.1.1.43 IUBMB
Fragment: residues 111-366
Gene Name(s): SETD7 Gene View KIAA1717 KMT7 SET7 SET9

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KH3
Query on KH3

A 5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}- 5'-deoxyadenosine
C22 H38 N8 O5
XWQXPIOHEBRBJA-UQEZQTQMSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.186
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 101.84 α = 90.00
b = 39.13 β = 90.00
c = 67.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-10
  • Released Date: 2013-03-27
  • Deposition author(s): Niwa, H., Handa, N., Tomabechi, Y., Honda, K., Toyama, M., Ohsawa, N., Shirouzu, M., Kagechika, H., Hirano, T., Umehara, T., Yokoyama, S.

Revision History

  • 2014-04-30
    Type: Citation | Details: Citation update