3VTO

The crystal structure of the C-terminal domain of Mu phage central spike

Structural Biology Knowledgebase: 3VTO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VTO

Classification: METAL BINDING PROTEIN

Total Structure Weight: 77353.48

Macromolecule Entities
Molecule Chains Length Organism Details
Protein gp45 A, B, C..., P, Q, RA, B, C, P, Q, R 115 Enterobacteria phage mu Fragment: UNP residues 92-197
Gene Name(s): Mup45
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE
Query on FE

A, P FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, Q CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

C, P CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.162
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.40 α = 90.00
b = 152.40 β = 91.01
c = 53.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-01
  • Released Date: 2013-02-06
  • Deposition author(s): Harada, K., Yamashita, E., Nakagawa, A., Takeda, S.

Revision History

No revisions since initial release