3VSI

Crystal structure of native 1,6-APD (2-Animophenol-1,6-dioxygenase) complex with 4-Nitrocatechol

Structural Biology Knowledgebase: 3VSI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 3VSI

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 129185.39

Macromolecule Entities
Molecule Chains Length Organism Details
2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit A, C 271 Comamonas testosteroni EC#: 1.13.11.8 IUBMB
Gene Name(s): cnbCa amnA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
2-amino-5-chlorophenol 1,6-dioxygenase beta subunit B, D 312 Comamonas testosteroni EC#: 1.13.11.74 IUBMB
Gene Name(s): cnbCb amnB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4NC
Query on 4NC

B, D 4-NITROCATECHOL
C6 H5 N O4
XJNPNXSISMKQEX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

B, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.204
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 272.73 α = 90.00
b = 48.26 β = 109.61
c = 108.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-25
  • Released Date: 2013-01-16
  • Deposition author(s): Li, D.F., Hou, Y.J., Hu, Y., Wang, D.C., Liu, W.

Revision History

No revisions since initial release