3VQ8

HIV-1 IN core domain in complex with (3R)-3,4-dihydro-2H-chromen-3-ylmethanol

Structural Biology Knowledgebase: 3VQ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VQ8

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35436.19

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 157 Human immunodeficiency virus 1 Fragment: integrase core domain, UNP residues 771-927
Mutation: C56S, S123G, T124A, K127R, W131D, F139D, F185H
Gene Name(s): pol

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BCU
Query on BCU

A, B (3R)-3,4-dihydro-2H-chromen-3-ylmethanol
(3R)-3,4-dihydro-2H-1-benzopyran-3-ylmethanol (Synonym)
C10 H12 O2
UPDSWAQIQZFOLF-MRVPVSSYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.233
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.10 α = 90.00
b = 49.10 β = 90.00
c = 103.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-20
  • Released Date: 2013-01-30
  • Deposition author(s): Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.

Revision History

No revisions since initial release