3VNR

Co-crystal structure of NRPS adenylation protein CytC1 with aminobutyric acid and AMP from streptomyces

Structural Biology Knowledgebase: 3VNR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 3VNR

Classification: LIGASE

Total Structure Weight: 59443.54

Macromolecule Entities
Molecule Chains Length Organism Details
NRPS adenylation protein CytC1 A 544 Streptomyces sp.

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ABA
Query on ABA

A ALPHA-AMINOBUTYRIC ACID
C4 H9 N O2
QWCKQJZIFLGMSD-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.189
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.02 α = 90.00
b = 157.02 β = 90.00
c = 157.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-17
  • Released Date: 2013-01-23
  • Deposition author(s): Okumura, H., Ueki, M., Shiro, Y., Osada, H.

Revision History

No revisions since initial release