3VAS

Adenosine kinase from Schistosoma mansoni in complex with adenosine in occluded loop conformation

Structural Biology Knowledgebase: 3VAS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VAS

Classification: TRANSFERASE

Total Structure Weight: 83286.79

Macromolecule Entities
Molecule Chains Length Organism Details
Putative adenosine kinase A, B 370 Schistosoma mansoni EC#: 2.7.1.20 IUBMB
Fragment: Adenosine kinase
Gene Name(s): Smp_008360

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADN
Query on ADN

A, B ADENOSINE
C10 H13 N5 O4
OIRDTQYFTABQOQ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.177
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.97 α = 90.00
b = 180.12 β = 90.00
c = 79.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-29
  • Released Date: 2012-11-14
  • Deposition author(s): Romanello, L., Bachega, F.R., Garatt, R.C., DeMarco, R., Brandao-neto, J., Pereira, H.M.

Revision History

  • 2013-01-16
    Type: Citation | Details: Citation update
  • 2013-01-02
    Type: Citation | Details: Citation update