3V3N

Crystal structure of TetX2 T280A: an adaptive mutant in complex with minocycline

Structural Biology Knowledgebase: 3V3N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.221

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3V3N

Classification: OXIDOREDUCTASE / ANTIBIOTIC

Total Structure Weight: 175751.03

Macromolecule Entities
Molecule Chains Length Organism Details
TetX2 protein A, B, C, D 378 Bacteroides thetaiotaomicron Fragment: TetX2 protein
Mutation: E94K, E266K, T280A

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
JSmol
MIY
Query on MIY

A, B, C, D (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)- 3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A- OCTAHYDROTETRACENE-2-CARBOXAMIDE
MINOCYCLINE (Synonym)
C23 H27 N3 O7
DYKFCLLONBREIL-KVUCHLLUSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.221
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.43 α = 111.11
b = 80.10 β = 90.10
c = 87.36 γ = 93.01

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-13
  • Released Date: 2013-01-02
  • Deposition author(s): Walkiewicz, K., Shamoo, Y.

Revision History

No revisions since initial release