3V16

An intramolecular pi-cation latch in phosphatidylinositol-specific phospholipase C from S.aureus controls substrate access to the active site

Structural Biology Knowledgebase: 3V16 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.156

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3V16

Classification: LYASE

Total Structure Weight: 34500.09

Macromolecule Entities
Molecule Chains Length Organism Details
1-phosphatidylinositol phosphodiesterase A 303 Staphylococcus aureus EC#: 4.6.1.13 IUBMB
Gene Name(s): plc NWMN_0041
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
INS
Query on INS

A 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
MYO-INOSITOL (Synonym)
C6 H12 O6
CDAISMWEOUEBRE-GPIVLXJGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.156
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 104.16 α = 90.00
b = 43.61 β = 90.00
c = 62.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-09
  • Released Date: 2012-04-04
  • Deposition author(s): Goldstein, R.I., Cheng, J., Stec, B., Roberts, M.F.

Revision History

  • 2012-04-18
    Type: Other | Details: --