3UT3

A novel PAI-I inhibitor and its structural mechanism

Structural Biology Knowledgebase: 3UT3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UT3

Classification: HYDROLASE INHIBITOR

Total Structure Weight: 169534.08

Macromolecule Entities
Molecule Chains Length Organism Details
Plasminogen activator inhibitor 1 A, B, C, D 375 Homo sapiens Mutation: N150H, K154T, Q319L, M354I
Gene Name(s): SERPINE1 Gene View PAI1 PLANH1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EMJ
Query on EMJ

B 2,5-dihydroxy-3-undecylcyclohexa-2,5-diene- 1,4-dione
C17 H26 O4
IRSFLDGTOHBADP-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.202
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.25 α = 90.89
b = 74.95 β = 93.33
c = 103.78 γ = 115.72

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-25
  • Released Date: 2013-02-06
  • Deposition author(s): Lin, Z.H., Hong, Z.B., Shi, X.L., Hu, L.H., Andreasen, P.A., Huang, M.D.

Revision History

No revisions since initial release