3UL5

Saccharum officinarum canecystatin-1 in space group C2221

Structural Biology Knowledgebase: 3UL5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UL5

Classification: HYDROLASE INHIBITOR

Total Structure Weight: 61677.08

Macromolecule Entities
Molecule Chains Length Organism Details
Canecystatin-1 A, B, C, D 139 Saccharum officinarum Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.225
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 99.77 α = 90.00
b = 113.99 β = 90.00
c = 86.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-10
  • Released Date: 2012-11-28
  • Deposition author(s): Valadares, N.F., Pereira, H.M., Oliveira-Silva, R., Garratt, R.C.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update
  • 2013-01-02
    Type: Refinement description | Details: update TLS records
  • 2013-01-02
    Type: Citation | Details: Citation update