3U1Q

Crystal Structure of M. tuberculosis LD-transpeptidase type 2 with 2-Mercaptoethanol

Structural Biology Knowledgebase: 3U1Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 3U1Q

Classification: PEPTIDOGLYCAN BINDING PROTEIN

Total Structure Weight: 63204.80

Macromolecule Entities
Molecule Chains Length Organism Details
Mycobacteria Tuberculosis LD-transpeptidase type 2 A, B 287 Mycobacterium tuberculosis EC#: 2.3.2 IUBMB
Gene Name(s): ldtB MT2594 V735_02606
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A, B BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.185
  • Space Group: I 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.69 α = 90.00
b = 121.01 β = 90.00
c = 122.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-30
  • Released Date: 2012-12-05
  • Deposition author(s): Erdemli, S., Bianchet, M.A., Gupta, R., Lamichhane, G., Amzel, L.M.

Revision History

No revisions since initial release