3U0L

Crystal structure of the engineered fluorescent protein mRuby, crystal form 1, pH 4.5

Structural Biology Knowledgebase: 3U0L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.161
  • R-Value Work: 0.126

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3U0L

Classification: FLUORESCENT PROTEIN

Total Structure Weight: 25866.65

Macromolecule Entities
Molecule Chains Length Organism Details
mRuby A 232 Entacmaea quadricolor Mutation: M64X, Y64X, G64X, D196S
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
NRQ
Query on NRQ
A L-PEPTIDE LINKING C16 H17 N3 O4 S MET , TYR , GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.161
  • R-Value Work: 0.126
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 31.77 α = 90.00
b = 67.44 β = 90.00
c = 95.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-28
  • Released Date: 2012-10-03
  • Deposition author(s): Akerboom, J., Looger, L.L., Schreiter, E.R.

Revision History

  • 2014-01-29
    Type: Citation | Details: Citation update