3TGR

Crystal structure of unliganded HIV-1 clade C strain C1086 gp120 core

Structural Biology Knowledgebase: 3TGR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.223

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TGR

Classification: VIRAL PROTEIN

Total Structure Weight: 82608.94

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 clade C1086 gp120 A, B 358 Human immunodeficiency virus 1 Gene Name(s): env

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.223
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.86 α = 90.00
b = 127.51 β = 90.00
c = 193.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-17
  • Released Date: 2012-04-04
  • Deposition author(s): Kwon, Y.D., Kwong, P.D.

Revision History

  • 2012-05-23
    Type: Citation | Details: Citation update
  • 2012-05-09
    Type: Other | Details: updated tls selections