3SR0

Crystal Structure of the Phosphoryl Transfer Transition State Mimic in the Adenylate Kinase: ADP/AlF4/AMP in the active site

Structural Biology Knowledgebase: 3SR0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.148

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3SR0

Classification: TRANSFERASE

Total Structure Weight: 48342.02

Macromolecule Entities
Molecule Chains Length Organism Details
Adenylate kinase A, B 206 Aquifex aeolicus EC#: 2.7.4.3 IUBMB
Gene Name(s): adk aq_078

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
JSmol
ALF
Query on ALF

A, B TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Ligand Explorer
 
JSmol
AMP
Query on AMP

A, B ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.148
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.95 α = 90.00
b = 69.58 β = 90.00
c = 85.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-06
  • Released Date: 2012-10-10
  • Deposition author(s): Cho, Y.-J., Kern, D.

Revision History

  • 2015-02-18
    Type: Citation | Details: Citation update
  • 2015-01-28
    Type: Citation | Details: Citation update
  • 2015-01-14
    Type: Citation | Details: Citation update