3RTH

Structure of Bace-1 (Beta-Secretase) in Complex with 6-(2-(3,3-Dimethylbut-1-ynyl)phenyl)quinolin-2-amine

Structural Biology Knowledgebase: 3RTH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RTH

Classification: Hydrolase / Hydrolase Inhibitor

Total Structure Weight: 46630.92

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A 411 Homo sapiens EC#: 3.4.23.46 IUBMB
Fragment: UNP residues 43-453
Mutation: R-5K, R-4K
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
RTH
Query on RTH

A 6-[2-(3,3-dimethylbut-1-yn-1-yl)phenyl]quinolin- 2-amine
C21 H20 N2
IFUYBWIZKMAADM-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RTH Kd: 6100 nM (99) BindingDB

N/A in BindingMoad
Kd: 6100 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.226
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.04 α = 90.00
b = 102.04 β = 90.00
c = 169.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-03
  • Released Date: 2011-08-31
  • Deposition author(s): Sickmier, E.A.

Revision History

No revisions since initial release